Index

 

User Guide

 

Tips & Tricks

 

Tutorial

 

Feedback

 

Art Gallery

 

 

 

home


Last modified
31 March 98
by N.Guex

 

References


As several people have asked me how they should cite Swiss-PdbViewer, I have included references. You must at least use the third one.
The first one is a published abstract, the second one comes from the PDB newsletter. The third one is description of the homology modelling capabilities of Swiss-PdbViewer used in conjunction to the SWISS-MODEL server.It also gives a detailed example of what accuracy level you can expect from a model, and should be very instructive to people not familiar with protein modelling.

  • Guex, N.(1996)
    Swiss-PdbViewer: A new fast and easy to use PDB viewer for the Macintosh.
    Experientia 52, pp. A26.

     

  • Guex, N and Peitsch, M.C.(1996)
    Swiss-PdbViewer: A Fast and Easy-to-use PDB Viewer for Macintosh and PC.
    Protein Data Bank Quaterly Newsletter 77, pp. 7.

  • Guex, N. and Peitsch, M.C. (1997)
    SWISS-MODEL and the Swiss-PdbViewer: An environment for comparative protein modeling.
    Electrophoresis 18, 2714-2723.

If you can also include somewhere the official url, it would be nice.
http://www.expasy.ch/spdbv/mainpage.htm


Articles cited in user guide (in construction)

 

  1. Weiner, S.J., Kollman, P.A., Case, D.A., Singh, U.C., Ghio, C., Alagona, G., Profeta, S.,Weiner, P.K.(1984)
    A new force field for molecular mechanical simulation of nucleic acids proteins.
    J. Am. Chem. Soc. 106,765-784.

  2. Morris, A.L., MacArthur, M.W., Hutchinson, E.G., Thornton, J.M.(1992)
    Stereochemical Quality of Protein Structure Coordinates.
    PROTEINS: Structure, Function, and Genetics 12,345-364.

  3. Carson, M. (1987)
    Ribbon model of macromolecules.
    J. mol. Graphics. 5,103-106.

  4. Vriend G. (1987,1993,1997)
    whatcheck (html), whatcheck (ftp), whatcheck (ftp).

  5. Huang, X., Miller, M. (1991)
    A Time-Efficient, Linear-Space Local Similarity Algorithm
    Adv. Appl. Math. 12,337-357.

  6. Sippl, J.M. (1990)
    Calculation of Conformational Ensembles from Potentials of Mean Force: an approach to the knowledge based prediction of local structures in globular proteins.
    J. Mol. Biol. 213,859-883.