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org.emboss.jemboss.parser
Class Ajax

java.lang.Object
  |
  +--org.emboss.jemboss.parser.Ajax

public class Ajax
extends java.lang.Object

Used with JNI to EMBOSS ajax library to determine sequence attributes.

Field Summary

static int length
          sequence length

static boolean protein
          true if the sequence is protein

static float weight
          sequence weight

Constructor Summary

Ajax()


Method Summary

(package private) static void ()


boolean seqsetType(java.lang.String usa)


boolean seqType(java.lang.String usa)
          determine sequence attributes

void setLength(int length)
          Sets the sequence length

void setProtein(boolean protein)
          Sets whether sequence is protein (true)

void setWeight(float weight)
          Sets the sequence weight

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

protein

public static boolean protein

true if the sequence is protein

length

public static int length

sequence length

weight

public static float weight

sequence weight

Constructor Detail

Ajax

public Ajax()

Method Detail

seqType

public boolean seqType(java.lang.String usa)

determine sequence attributes

seqsetType

public boolean seqsetType(java.lang.String usa)

static void ()

setLength

public void setLength(int length)

Sets the sequence length

Parameters:: int - sequence length

setWeight

public void setWeight(float weight)

Sets the sequence weight

Parameters:: float - sequence weight

setProtein

public void setProtein(boolean protein)

Sets whether sequence is protein (true)

Parameters:: boolean - sequence type